RNA Isolation and Quantitative RT-PCR

LT Ling-chang Tong
YW Yue Wang
ZW Zhi-bin Wang
WL Wei-ye Liu
SS Sheng Sun
LL Ling Li
DS Ding-feng Su
LZ Li-chao Zhang
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Total RNA was extracted from the colon tissue in each group with Trizol reagent according to the manufacturer’s instructions. After reverse transcription, complementary DNA was used as templates for PCR. Primers for the inflammatory factors and internal reference were as follows: tumor necrosis factor-α (TNF-α): forward, 5′-CATTTCCACG ATTTCCCAGA-3′, reve-rse, 5′-GGAAAGCCCATTTGAGTCCT-3′; interleukin (IL)-1β: forward, 5′-CTCACAAGCAGAGCACAAGC-3′, reverse, 5′-CAGTCCAGCCCATA CTTTAGG-3′; IL-6: forward, 5′-CGGAGAGGAGACTTCACAGAG-3′, reverse, 5′-CATTTCCACGATTTCCCAGA-3′; GAPDH: forward, 5′-GTATGACTCCACTC ACGGCAAA-3′, reverse, 5′-GGTCTCGCTCCTGGAAGATG-3′. The housekeeping gene GAPDH was used as internal control, and the amount of RNA was calculated by the comparative threshold cycle method as recommended by the manufacturer. Quantitative real-time PCR was carried out by ABI 7500 real-time PCR system (Applied Biosystems, Foster, CA, USA).

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