Bio-informatical analysis

JC Julie Carnesecchi
CC Catherine Cerutti
JV Jean-Marc Vanacker
CF Christelle Forcet
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RNA-seq (Illumina HiSeq) data obtained in human breast samples were collected from The Cancer Genome Atlas (TCGA) data portal in 2016/05 (https://gdc-portal.nci.nih.gov/). Data were available as raw counts or TPM (transcript per million) for a total of 20531 genes. Paired samples from 112 patients, made on one breast tumor and one normal sample from the same patient, were used to study gene expression.

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