Improve Research Reproducibility A Bio-protocol resource
- Home
- Protocols
-
Request a Protocol
Ask a
question
Favorite
Structural sequence alignments were done with Swiss PDB Viewer [45] and Espript [46]. For structure analyses, PyMOL and UCSF Chimera [47] were used. Superpositions were done with the SSM algorithm [48], and structural homologues were searched using Salami [49]. Modeling of the substrate complex and a complex with a 3-base RNA oligonucleotide was done in YASARA [50]. Electrostatic surfaces were calculated using PDB2PQR and ABPS [51].
Copyright and License information: ©2017 Myllykoski, Kursula
This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Do you have any questions about this protocol?
Post your question to gather feedback from the community. We will also invite the authors of this article to respond.
Post a Question0 Q&A
