Assay of PAT-048 inhibition of ATX

KB Katharine E. Black
EB Evgeny Berdyshev
GB Gretchen Bain
FC Flavia V. Castelino
BS Barry S. Shea
CP Clemens K. Probst
BF Benjamin A. Fontaine
IB Irina Bronova
LG Lance Goulet
DL David Lagares
NA Neil Ahluwalia
RK Rachel S. Knipe
VN Viswanathan Natarajan
AT Andrew M. Tager
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Inhibition of plasma ATX activity by the selective ATX inhibitor PAT-048 (patent publication number WO 2012024620 A2; Amira Pharmaceuticals, San Diego, CA, USA) was evaluated by measuring the concentration of 20:4 LPA produced from the endogenous LPC in mouse plasma after incubating for 4 h at 37°C (concentrations of 18:1 and 18:0 LPA were also measured, with similar results). In brief, BALB/c blood was collected into heparinized Vacutainer tubes (BD Biosciences, San Diego, CA, USA) by cardiac puncture and centrifuged at 800 g for 10 min, to prepare the plasma. An aliquot of plasma was mixed with vehicle and precipitated immediately with ice-cold methanol to determine baseline concentrations of 20:4 LPA. For inhibition studies, 40 µl plasma was mixed with 1 µl PAT-048 or vehicle control (DMSO) and incubated at 37°C for 4 h before precipitating with 5 volumes of ice-cold methanol containing 17:0 LPA as the internal standard. The samples were incubated for 10 min on ice before centrifugation at 4000 g for 10 min at 4°C. The supernatant (150 µl) was mixed with 100 µl 90:10:0.1 water:acetonitrile:ammonium hydroxide then centrifuged at 4000 g for 10 min at 4°C. The concentration of 20:4 LPA was measured by LC-MS/MS by injecting 20 µl onto an Xbridge 2.1 × 50 mm, 5 μm, C8 column (Waters, Milford, MA, USA). Mobile phase A was 90:10:0.1 water:acetonitrile:ammonium hydroxide. Mobile phase B was 10:90:0.1 water:acetonitrile:ammonium hydroxide. Flow rate was 800 μl/min with initial conditions of 90% mobile phase A and 10% mobile phase B. Initial conditions were held for 0.5 min then mobile phase B concentration was increased linearly to 90% over 1 min to elute 20:4 LPA and its internal standard, 17:0 LPA. This condition (10% A, 90% B) was held for 0.5 min. Initial conditions were restored and held for 0.9 min to equilibrate the column. An API-4000 Q-trap mass spectrometer (AB Sciex) was operated in negative-ion multiple-reaction monitoring mode to detect 20:4 LPA and 17:0 LPA. The transitions monitored were 457.2 to 153.0 and 423.2 to 153.0 for 20:4 LPA and 17:0 LPA, respectively. Source conditions were optimized by infusing 20:4 LPA. Declustering potential was −60 and collision energy was −30.

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