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Phylogenetic analysis and genomic comparison

GZ Gang Zhou
HP Hong Peng
YW Ying-si Wang
XH Xiao-mo Huang
XX Xiao-bao Xie
QS Qing-shan Shi
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To understand the evolutional relationship between C. werkmanii BF-6 and 11 Citrobacter sp. strains, a phylogenetic tree was constructed using MEGA6 according to their 16S ribosomal RNA. For comparative genomic analysis of the BF-6 strain, genome sequences of these 11 Citrobacter sp. strains (Table ​(Table2)2) were downloaded from NCBI. The subprogram phyml of TreeBeST (http://treesoft.sourceforge.net/treebest.shtml) was used to construct a phylogenetic tree with the default parameters. Non-parametric bootstrap analysis with thousand re-samplings was conducted to obtain bootstrap values for all branches.

Copyright and License information: The Author(s). ©2017
Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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