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Mapping data for paused RNA polymerase II, insulators and enhancers

VK Varvara A. Khoroshko
VL Viktor G. Levitsky
TZ Tatyana Yu. Zykova
OA Oksana V. Antonenko
EB Elena S. Belyaeva
IZ Igor F. Zhimulev
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Stalled RNA polymerase II data (mapping of RNAs produced by promoter-proximal Pol II [35]) were downloaded from the GEO database, GSE18643 (samples GSM463298 and GSM463299).

Genome-wide data for insulator protein enrichment profiles were extracted from the modENCODE database (http://data.modencode.org/). In total, we used 16 tracks showing insulator protein distributions and 2 tracks showing enhancer localization [29]. The latter data were taken from S1 Table using Verification_status = “correct”, Positive = “1” tags. Data for the cis-regulatory modules (CRM) were downloaded from the RedFly resource (http://redfly.ccr.buffalo.edu/index.php) [36]. Description of the insulator protein and enhancer datasets is provided in S1 Table.

Copyright and License information:  ©2016 Khoroshko et al
This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

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