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2.1. Classical Bootstrap

FK Fabian Klötzl
BH Bernhard Haubold
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An alignment consists of m rows of nucleotides, corresponding to taxa, and n columns, corresponding to homologous residues. Given such an alignment, we compute the “classical” bootstrap by resampling columns with replacement and recomputing a matrix of Jukes–Cantor distances. This procedure is implemented in our program dnaDist, the sources and documentation of which are available from the website accompanying this paper:

Copyright and License information:  ©2016 by the authors; licensee MDPI, Basel, Switzerland.
This article is an open access article distributed under the terms and conditions of the Creative Commons by Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/).

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