Whole genome sequencing and BGC analysis

GW Gerard Wright
MJ Manoj Jangra
DT Dmitrii Travin
EA Elena Aleksandrova
MK Manpreet Kaur
LD Lena Darwish
KK Kalinka Koteva
DK Dorota Klepacki
WW Wenliang Wang
MT Maya Tiffany
AS Akosiererem Sokaribo
BC Brian Coombes
NV Nora Vázquez-Laslop
YP Yury Polikanov
AM Alexander Mankin
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Genomic DNA from Paenibacillus sp. M2 was isolated using a DNA isolation kit (Promega) and sequenced using Nanopore and Illumina MiSeq. Unicycler was used to perform a hybrid assembly of Illumina and Oxford Nanopore reads35. SPAdes was first used to generate a short-read assembly graph, which was scaffolded with long reads. Multiple rounds of polishing were conducted using Pilon. A single contig was obtained and analyzed using antiSMASH 6.036 to identify the BGC responsible for LAR synthesis.

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