2.13. Chromatin immunoprecipitation (ChIP) analysis

DK Dae‐Hwan Kim
MS Minjeong Sung
MP Myong‐Suk Park
ES Eun‐Gene Sun
SY Sumin Yoon
KY Kyung Hyun Yoo
KR Kamalakannan Radhakrishnan
SJ Sung Yun Jung
WB Woo‐Kyun Bae
SC Sang‐Hee Cho
IC Ik‐Joo Chung
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ChIP assays to validate JunB binding at TGFB1 promoter were performed using Hepa‐1c1c7 cell lysates and an EZ‐ChIP Kit (17‐371, Merck‐Millipore, Burlington, MA, USA) with α‐JunB (#3753, CST) or normal rabbit IgG (#2729, CST). Briefly, formaldehyde‐cross‐linked cells were lysed and sonicated to prepare genomic DNA fragments (200‐500 bp). For each assay, 4 µg of antibody was used to immunoprecipitate 40 µg of input chromatin. Immune complexes were recovered using 30 µL of resuspended protein A/G agarose. After washing, the DNA was de‐crosslinked and eluted, as described in the manufacturer's instructions. qPCR was performed in a 7500 Fast Thermal Cycler (Life Technologies, Carlsbad, CA, USA), using the ChIP primers listed in Supplementary Table S3.

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