2.5. Processing of resting state fMRI data

XH Xiaofu He
DR Diana V. Rodriguez-Moreno
YC Yael M. Cycowicz
KC Keely Cheslack-Postava
HT Huilan Tang
ZW Zhishun Wang
LA Lawrence V. Amsel
MR Megan Ryan
LG Lupo Geronazzo-Alman
GM George J. Musa
AB Adam Bisaga
CH Christina W. Hoven
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Standard resting state fMRI data preprocessing procedures and first-level analyses were performed using SPM12 (http://www.fil.ion.ucl.ac.uk/spm/) and CONN toolbox (Whitfield-Gabrieli and Nieto-Castanon, 2012), including motion realignment, slice-timing correction and spatial normalization of functional images to the Montreal Neurological Institute (MNI) space, MNI152. The functional images were resampled at 2 mm3, and smoothed using a Gaussian smoothing kernel with 8 mm3 full-width at half maximum (FWHM). Linear regression was used to remove confounding factors of blood-oxygen-level-dependent (BOLD) signal variation, including six head motion parameters, white matter (WM), cerebrospinal fluid (CSF) signals and outlier scans. Outlier scans were detected using Artifact Detection Tools (ART) (included in the CONN toolbox), and were defined as scans with composite motion (combined translational and rotational displacements) greater than 2 mm or 2°, or if the global mean signal was greater than 9 SD. If the percentage of outlier scans was ≥20%, we excluded that subject from further analysis.

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