Data analysis

MZ Mei Hong Zhu
AJ Aditi H. Jogdand
JJ Jinyoung Jang
SN Sai C. Nagella
BD Brati Das
MM Milena M. Milosevic
RY Riqiang Yan
SA Srdjan D. Antic
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Optical traces were conditioned and analyzed in Neuroplex (RedShirtImaging, LLC). Bleach correction was done by subtracting an exponential fit from the optical trace. Each trace was a product of temporal averaging (n = 4 sweeps), spatial averaging (21 – 37 pixels), low-pass Gaussian filter with 77 Hz cutoff, and high-pass Tau filter (10), unless stated otherwise. Optical signal amplitude was measured in Neuroplex as fractional change in light intensity (ΔF/F in %); typical for calcium and voltage imaging experiments [22]. Resting fluorescence intensity (RFI) was measured at standard illumination – fixed LED intensity, by averaging the resting light intensities of 37 neighboring pixels in cortical layer 2/3. Signal to noise ratio (SNR) was measured as the optical signal amplitude (filtered at 77 Hz) divided by peak-to-peak noise measured at unfiltered baseline preceding a biological signal. Temporal Summation (paired pulse facilitation) was calculated as a ratio of the amplitudes of the third peak divided by the first, in the same optical trace. Distance Attenuation was also calculated as a ratio of corresponding peak amplitudes at two recording locations (ROIs). Quantifications were organized in MS Excel. Results are presented as mean ± standard error of the mean (SEM), unless stated otherwise. Statistical significance was determined with unpaired, two-tailed Student’s t-tests. Results were considered statistically significant if the P ≤ 0.05.

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