Cellular UbG76V-GFP accumulation assay

PN Purbasha Nandi
KD Kira DeVore
FW Feng Wang
SL Shan Li
JW Joel D. Walker
TT Thanh Tung Truong
ML Matthew G. LaPorte
PW Peter Wipf
HS Heidi Schlager
JM John McCleerey
WP William Paquette
RC Rod Carlo A. Columbres
TG Taiping Gan
YP Yu-Ping Poh
PF Petra Fromme
AF Andrew J. Flint
MW Mark Wolf
DH Donna M. Huryn
TC Tsui-Fen Chou
PC Po-Lin Chiu
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UbG76V-GFP/ODD-Luc HeLa cells98 were plated as 4500 cells per well per 30 μL in 384 well plate (Greiner 781091). Clear DMEM containing 2.5% FBS, 1% L-glutamine, and 1% penicillin-streptomycin was used as an assay medium. The next day, cells were treated with the compounds (serial 2-fold dilutions with a starting concentration of 42, 10.5, or 4.2 μM, eight concentrations) and incubated for 6 h. ImageXpress high-content confocal microscope (Molecular Devices, LLC., San Jose, CA) was used to image cells at GFP channel. The percentage of UbG76V-GFP accumulation (%Acc) is calculated using the following formula:

%Acc = (GFP signal of test compound – GFP signal of DMSO)/(GFP signal of 5 μM NMS-874 – GFP signal of DMSO) * 100.

The IC50 values were calculated by fitting the %Acc from four replicates with various concentrations of compounds using GraphPad Prism 7.0 (GraphPad, Boston, MA).

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