To begin, we performed a naive analysis, fitting joint unspliced and spliced count data using a conventional (5,7) stochastic transcriptional model, namely a two-stage birth-death process coupled to a bursting promoter:
where and are unspliced and spliced mRNA species; , , and are the rates of Markovian transcription, splicing, and degradation processes, respectively; and is a geometrically distributed burst size with mean . We assumed the system had reached its unique steady state. The generating function solution to this system has been reported by Singh and Bokes (7).
Do you have any questions about this protocol?
Post your question to gather feedback from the community. We will also invite the authors of this article to respond.