Data acquisition and preprocessing

HA Haleh Aghajani
MG Marc Garbey
AO Ahmet Omurtag
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A quantitative meta-analysis has found the cortical regions that were activated robustly during letter n-back task (Broadman Areas 6, 7, 8, 9, 10, 32, 40, 45, 46, 47, and supplementary motor area; Owen et al., 2005). We used this information together with the results of previous EEG studies to choose the optimum locations for our 19 EEG electrodes (F7, F8, F3, F4, Fz, Fc1, Fc2, T3, T4, C3, C4, Cp1, Cp2, P3, P4, Pz, Poz, O1, O2). We used Fpz as the ground and Cz as the reference electrode. In the literature, several different reference electrode positioning is indicated, which have their own set of strengths and weaknesses. Among them, linked ears and vertex (Cz) are the most common. Cz reference is advantageous when it is located in the middle among active electrodes, however, for close points, it may result in poor resolution (Teplan, 2002). Based on the previous studies, central brain region in not majorly involved during the performance of a WM task compared to the frontal and parietal lobes and choosing Cz as the reference may be more appropriate rather than any other electrode in the 10–20 system. microEEG (a portable device made by Bio-Signal Group Inc., Brooklyn, New York) was used to sample EEG at 250 Hz (Figure (Figure3a).3a). Electrode impedances were kept below 10 kΩ. A 128-channel electrode cap with Ag/AgCl electrodes (EasyCap, Germany) was used to physically stabilize the sensors and provide uniform scalp coverage. We located the fNIRS optodes on the subject's forehead to fully cover the PFC, which plays a significant role in WM (Fitzgibbon et al., 2013). Seven sources and seven detectors were located on the forehead resulting in 19 optical channels, each consisting of a source–detector (S–D) pair separated by a distance of 3 cm. The 19 optical channels used in this study are shown in Figure Figure3c.3c. The S–D placement starts from the left hemisphere and ends on the right hemisphere. S4 and D4 are located at the center of forehead, where D4 is located at the AFz location and channel 10 is located at the Fpz location according to the standard international 10–20 system (Figures 3b,c). We used our triplet-holders (Keles et al., 2014a) on the forehead to keep each EEG electrode in the middle of an S–D pair and fix the distances between the sensors. fNIRS signals were acquired at 8.93 Hz via NIRScout extended (NIRx Medical Technologies, New York) device, which was synchronized with the EEG data by means of common event triggers (Figure (Figure3a).3a). NIRScout is a dual wavelength continuous wave system. The EEG signal was band-pass filtered (0.5–80 Hz), and a 60 Hz notch filter was used to reduce the power line noise.

(a) EEG+fNIRS recording setup. Subject interaction with the computer, synchronization of EEG and fNIRS signal, recording of EEG and fNIRS signals, and data transmission to the acquisition platform. (b) Coronal view of the subject showing the close view of the placement fNIRS optodes and EEG electrodes. (c) Topographical view of fNIRS sources (Si, black) and detectors (Di, red) and EEG electrodes (green). Each pair of source and detector separated by 3 cm creates a channel (CHi). We used the signals from F7, Fpz, and F8.

The spatial Laplacian transform is generally effective in muscle artifact removal from EEG signal (Fitzgibbon et al., 2013). We subtracted the mean EEG voltage of the neighbor electrodes from each EEG signal. Figure Figure44 shows the configuration of neighbor electrodes for 19 EEG channels. Each detector in NIRScout device records the signal from each separate source in two different wavelengths (760 and 850 nm). Oxy- and deoxyhemoglobin concentration changes (HbO and HbR) were computed using the modified Beer-Lambert law (Sassaroli and Fantini, 2004) using standard values for the chromophore extinction coefficients and differential path-length factor (Keles et al., 2016). fNIRS might be contaminated with the movement, heart rate, and Mayer wave artifacts. In order to reduce these artifacts while retaining the maximum possible amount of information, a band pass filter of 0.01–0.5 Hz was applied to fNIRS signals. After the preprocessing step, two subjects were excluded from the rest of analysis due to the poor quality of the signal and excessive noise. The processed signals were inspected visually for the presence of muscle and motion, eye movements, and other artifacts. The recordings that were contaminated in excess of 10% by artifact were excluded as a whole (Keles et al., 2016). In addition, one subject was excluded since he was not sufficiently focused in the experiment according to 0-back low accuracy cut-off. Figure Figure55 shows a segment of preprocessed data for one of the subjects. The figure indicates the temporal variations in the fNIRS signals and the EEG frequency bands, which are utilized in feature extraction. First and second rows are HbO and HbR of fNIRS channel 17, respectively. Third row is the EEG time-frequency map for channel O2.

Topographic view of EEG electrodes showing neighborhood pattern for Laplacian spatial filtering. Inward arrows to each node indicate the corresponding neighbors used for spatial filtering.

Sample preprocessed EEG+fNIRS data for one of the subjects. Vertical dashes separate different n-back task and rest blocks. (a) Concentration changes of oxy-hemoglobin (red curve) and deoxy-hemoglobin (blue) for channel 17. (b) EEG Time-frequency map of the channel O2.

After preprocessing, each task block ({0, 1, 2, 3}-back) and rest block was divided into 5, 10, 20, or 25 s epochs in order to assess the effect of window size on classification results. Figure Figure66 shows four different epoch type with window size from 5 to 25 s. In most of the cases there is an overlap between adjacent epochs (half size of epoch's length). This overlap was considered in order to capture the unique temporal response for each individual, as there could be inter-subject variability in the time required for the hemodynamic response to peak, and/or in the number of peaks (Power et al., 2012). In addition, during the classification phase, an imbalance in the number of features within each class biases the training procedure in favor of the class with a higher number of training features (He and Garcia, 2009). In our experiment design we have 40 rest blocks and 10 blocks from each n-back task type. From each task block, 16, 8, 4, and 2 features were extracted when we changed the size of the window from 5 to 25 s, respectively. From each rest block 5, 4, 2, and 1 features were extracted when we changed the size of the window from 5 to 25 s, respectively.

Four different epoch styles based on length of windows. The task and rest blocks are divided into (A) 5, (B) 10, (C) 20, and (D) 25 s windows (wi).

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