Expression Profiling of AhAPX Genes

AR Ali Raza
YS Yasir Sharif
KC Kun Chen
LW Lihui Wang
HF Huiwen Fu
YZ Yuhui Zhuang
AC Annapurna Chitikineni
HC Hua Chen
CZ Chong Zhang
RV Rajeev K. Varshney
WZ Weijian Zhuang
request Request a Protocol
ask Ask a question
Favorite

The expression levels of all AhAPX genes at diverse developmental tissues/organs (embryo, cotyledon, testa, pericarp, peg, root and stem, root nodule, root tip, root, step tip, stem, leaf, and flower), under various hormones (ethylene, abscisic acid, paclobutrazol, brassinolide, and salicylic acid), and abiotic stress (drought and cold) conditions were evaluated using openly available transcriptome dataset of cultivated peanut (cultivar Shitouqi) at PGR database (see text footnote 1; BioProject PRJNA480120) (Zhuang et al., 2019). The detailed procedure for sample harvesting and data analysis is presented in our recent paper (Zhuang et al., 2019). Owing to the great differences in the expression trends, we normalize the log2 of fragments per kilobase of transcript per million (FPKM) values. Finally, the circular heat maps were designed by TBtools software.

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

post Post a Question
0 Q&A