Sample subcomponent type and survival analysis

DC Desheng Chen
CD Chao Dou
HL Haiyu Liu
BX Binshun Xu
BH Bowen Hu
LK Liangwen Kuang
JY Jiawei Yao
YZ Yan Zhao
SY Shan Yu
YL Yang Li
FW Fuqing Wang
MG Mian Guo
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The necroptosis-related lncRNA gene set described above was used for subtype glioma patients. Consistency analysis by using the ConsensusClusterPlus R package (v1.54.0), the maximum number of clusters is 6, and 80% of the total sample is drawn 100 times, clusterAlg = ‘hc’, innerLinkage = ‘ward.D2’. With the use of the Kaplan–Meier survival analysis of the different groups of samples from TCGA dataset, a comparison among different groups was made by log-rank test. HR (95% CI) and the median survival time (LT50) for different groups were determined. Meanwhile, the association between tumor subtypes and high-risk groups was also validated. The ‘Rtsne’ and ‘ggplot2’ packages were used to visualize data using principal component analysis (PCA) and t-distributed stochastic neighbor embedding (t-SNE).

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