Thermal Stability Shift Assay

MM Megan E. Mitchell
PG Petia Z. Gatzeva-Topalova
AB Austin D. Bargmann
TS Tarek Sammakia
MS Marcelo C. Sousa
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Thermal Stability Shift Assays (TSA) were carried out in a BioRad CFX96 Real-Time PCR system. Each sample was 50 μL in volume, with a protein concentration of 5 μM and a SYPRO Orange dye concentration of 1X. Each ligand was tested in triplicate at the indicated concentrations. Sample buffer conditions were 10% glycerol, 25 mM Tris-HCl pH 8.0, 200 mM KCl and 5 mM 2-mercaptoethanol. Melting curves were collected between 25 °C and 85 °C using 0.5 °C increments, holding at each temperature for 10 seconds prior to collecting fluorescence readings. The FRET channel was selected because SYPRO Orange has a large separation between its excitation (472 nm) and emission (570 nm), making the FRET mode ideal for data collection. Apparent KD values were calculated as previously described38, 39 (SI Fig. S5).

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