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Data extraction

JS JUAN SHEN
WZ WEIYU ZHANG
QJ QINQIN JIN
FG FUYU GONG
HZ HEPING ZHANG
HX HONGLIANG XU
JL JIEJIE LI
HY HUI YAO
XJ XIYA JIANG
YY YINTING YANG
LH LIN HONG
JM JIE MEI
YS YANG SONG
SZ SHUGUANG ZHOU
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The transcriptomic and clinical data of BRCA patients were obtained from The Cancer Genome Atlas (TCGA) database. Immunotherapy data of the GSE173839 BRCA cohort was extracted from the Gene Expression Omnibus (GEO). The Molecular Taxonomy of Breast Cancer International Consortium (METABRIC) dataset was downloaded from the cBio cancer genomics portal (cBioPortal). Only samples with complete clinical and survival data were included in the analysis. The transcriptomic and clinical data of the IMvigor210 cohort were extracted using the “IMvigor210CoreBiologies” R package (http://research-pub.gene.com/IMvigor210CoreBiologies/packageVersions/). Ethics committee approval was not required since all data were obtained from public databases. The flow chart is shown in Suppl. Fig. 1.

Copyright and License information:  ©2024 Shen et al.
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