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2.6.4 Construction of ceRNAs interaction (circRNA-miRNA-mRNA) network

JD Jutan Das
BK Baibhav Kumar
BS Bibek Saha
SJ Sarika Jaiswal
MI Mir Asif Iquebal
UA U. B. Angadi
DK Dinesh Kumar
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A ceRNAs network was constructed based on the ceRNAs theory, specifically the circRNA-miRNA-mRNA network, in order to gain insight into the interactions among circRNAs, miRNAs, and mRNAs. The miRNA dataset for common carp was obtained from literature (Wang et al., 2017b), while the mRNA data was acquired from the NCBI database. TargetFinder was used to identify circRNA targets of miRNAs (Fahlgren and Carrington, 2010). MRNA targets of identified miRNAs were determined by submitting miRNA sequences and common carp mRNA sequences to the psRNAtarget webserver.

Copyright and License information:  ©2023 Das, Kumar, Saha, Jaiswal, Iquebal, Angadi and Kumar.
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