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To assess how well relationship based on standard SNPs is also captured by one of the failed allele call marker sets, we used the relationship coefficients obtained from the relationship matrix calculated following VanRaden (2008) (see above) and calculated the Pearson correlation between relationship coefficients from SNPs and those from the failed allele calls.
Copyright and License information: ©2023 Weber, Chawla, Ehrig, Hickey, Frisch and Snowdon
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