The 916 complete sequenced SARS-CoV-2 genomes were aligned using the MUSCLE tool v3.8.3128. The phylogenetic analyses and tree reconstruction were carried out using the neighbour-joining algorithm implemented in the ARB software (v6.0.6) using the Jukes-Cantor correction29. The obtained phylogenetic tree was annotated and edited using the on-line tool “Interactive Tree of Life (iTol)”, available at https://itol.embl.de30.
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