Curation of GWAS VNN candidate genes

MD Madison L. Doolittle
SK Sundeep Khosla
DS Dominik Saul
request Request a Protocol
ask Ask a question
Favorite

Candidate genes were derived from the results of a previously published GWAS dataset.( 10 ) Briefly, this study identified 1103 independent SNPs within 515 genomic loci associated with calcaneal estimated bone mineral density (eBMD) using the UK Biobank cohort of 426,824 participants. Candidate genes were selected as the gene closest to the associated variant with the smallest p value of all conditionally independent variants within the same locus, generating 514 human candidate genes. Mouse orthologs were identified (SYNGO,( 17 ) bioDBnet( 18 )), while removing noncoding and microRNAs, resulting in 436 candidate genes for downstream analyses in murine datasets (Supplementary Table S1).

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

0/150

tip Tips for asking effective questions

+ Description

Write a detailed description. Include all information that will help others answer your question including experimental processes, conditions, and relevant images.

post Post a Question
0 Q&A