Molecular docking

XG Xuanyunjing Gong
SW Shanshan Wang
QY Qi Yu
MW Min Wang
FG Feng Ge
SL Shanshan Li
XY Xilan Yu
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The crystal structure of Cla4-homolog Pak4 was obtained from the Protein Data Bank (PDBID: 2X4Z). To visualize the docked conformation, water molecules and glycerol ligands were removed in the PyMoL molecular graphics system. The structure of Set1 peptides (226-RNSL-229) was generated using I-TASSER protein Structure and Function Prediction web server (http://zhanglab.ccmb.med.umich.edu/I-TASSER/). Molecular docking simulation of Pak4 and Set1 peptides was performed with the AutoDock Vina.

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