The rice population used in this study comprised 230 rice varieties (Supplementary Table S1) grown at the Pathum Thani Rice Research Center, Rice Department, Ministry of Agriculture. The experiment used a completely randomized design with five replicates. This experiment was conducted during in-season rice cultivation from August to December 2017. DNA was extracted from young leaf tissue using the Genomic DNA Mini Kit (Plant; Geneaid Biotech Ltd., Taiwan) according to the manufacturer’s protocol. Genomic DNA (gDNA) was quantified using a NanodropTM spectrophotometer and confirmed using agarose gel electrophoresis. Genomic DNA was sequenced using a Genome Analyzer (Illumina, Inc., San Diego, CA, USA).
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