2.4. Metabolomics Data Preprocessing

DL David H. Lynch
BR Blake R. Rushing
WP Wimal Pathmasiri
SM Susan McRitchie
DB Dakota J. Batchek
CP Curtis L. Petersen
DG Danae C. Gross
SS Susan C. J. Sumner
JB John A. Batsis
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The UHPLC-HRMS data was processed by Progenesis QI (version 2.1, Waters Corporation, Milford, MA, USA) for peak picking and alignment. Background signals were excluded by removing peaks with a higher mean intensity of the blanks, as compared to the QCSPs based on the unnormalized data. The data was normalized to a reference study pool sample using the “normalize to all” function in Progenesis, and signals with a relative standard deviation (RSD) > 50% across study pool replicates were excluded from further analysis [18].

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