Metabolomic Profiling

HC Haitao Chen
CY Chenxiao Ye
CW Changhong Wu
JZ Jiali Zhang
LX Lu Xu
XW Xuanying Wang
CX Chao Xu
JZ Jin Zhang
YG Yong Guo
QY Qinghua Yao
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The collected intestinal tissue samples for metabonomic analysis. The metabolites were extracted with 120 μL of precooled 50% methanol, vortexed mixed for 1 min, and incubated at room temperature for 10 min. After centrifugation at 4,000 g for 20 min, the supernatants were transferred into new 96 well plates. The samples were stored at -80 °C before the LC-MS analysis. First, all chromatographic separations were performed with an ultra-performance liquid chromatography (UPLC) system (SCIEX, UK). An ACQUITY UPLC T3 column (100 mm * 2.1 mm, 1.8 µm, Waters, UK) was used for the reversed phase separation. A high-resolution TripleTOF 5600plus tandem mass spectrometer (SCIEX, UK) was used to detect metabolites eluted from the column. The Q-TOF was operated in both positive and negative ion modes. LC-MS raw data files were converted into mzXML format and then processed with the XCMS, CAMERA, and metaX toolbox implemented in the R software.

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