RNA-seq data collection, read quality analysis and mapping

VD Viktor Demko
TB Tatiana Belova
MM Maxim Messerer
TH Torgeir R. Hvidsten
PP Pierre-François Perroud
AA Ako Eugene Ako
WJ Wenche Johansen
KM Klaus F. X. Mayer
OO Odd-Arne Olsen
DL Daniel Lang
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In total, 299 publicly available RNA-seq libraries for P. patens were downloaded from EMBL ENA service. With the 74 RNA-seq libraries produced in this study, 373 libraries were analyzed in total.

Raw data were quality-checked using FastQ83 and trimmed to remove adapter contamination and reads of poor quality using Trimmomatic84.

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