Differential expression and transcription factor analysis

AA Akshay Akshay
AG Ali Hashemi Gheinani
MB Mustafa Besic
SB Sophie Braga
AU Anne-Christine Uldry
MH Manfred Heller
HR Hubert Rehrauer
CF Catharine Aquino Fournier
FB Fiona C. Burkhard
KM Katia Monastyrskaya
ask Ask a question
Favorite

Differentially expressed genes were identified using the Bioconductor packages DESeq2 (version 1.30.1) [20] and edgeR (version 3.32.1) [21]. Genes with adjusted p-value < 0.1 were considered as significantly DEGs, The tftargets (version 1.3) library in R was used to access TRED, ITFP, TRRUST, and Marbach [2225] databases containing predicted and known human TF targets.

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

post Post a Question
0 Q&A