All strains isolated from human fecal samples were cultured aerobically at 37 °C for 24 h using brain heart infusion (BHI) agar. Clostridioides difficile EM304, a previously reported strain, was selected as the target strain for screening and was cultured anaerobically at 37 °C for 24 h in BHI broth41. All other Clostridioides strains for use in antimicrobial activity assays and their respective growth conditions are listed in Supplementary Table 1. All other indicator strains used in antimicrobial activity assays and their respective growth conditions are listed in Supplementary Table 2. Anaerobic conditions were maintained throughout using an anaerobic chamber (10% CO2, 10% H2, 80% N2). Where solid media were required, 1.5% agar (w/v) (Oxoid, Basingstoke, UK) or 2.5% agar (w/v) was added for growth of Bacillus, and for overlay assays, 0.75% agar (w/v) was added.
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