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Comparative analyses of plastomes

LF Luiz Henrique M. Fonseca
AN Alison G. Nazareno
VT Verônica A. Thode
AZ Alexandre R. Zuntini
LL Lúcia G. Lohmann
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To determine synteny, we compared the plastome of B. magnifica with plastomes of the eight selected Bignoniaceae species and that of L. origanoides. This analysis was performed in MAUVE 2.4.0 (Darling, Mau & Perna, 2010) using progressiveMauve as the alignment algorithm, and MUSCLE 3.6 (Edgar, 2004) as the internal aligner with default parameters. For each sample, only the IRa was maintained. The plastome size of B. magnifica was also compared with the 6,231 complete angiosperm plastomes available on GenBank (Genbank–genome, Sep. 2021). Plastome size information was compiled by angiosperm order.

Copyright and License information:  ©2022 Fonseca et al.
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