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4.7. Extracting 5 kb upstream of immune DE genes

AS Anjali Singh
MP Minakshi Prasad
BM Bina Mishra
SM Siddappa Manjunath
AS Amit Ranjan Sahu
GP G. Bhuvana Priya
SW Sajad Ahmad Wani
AS Aditya Prasad Sahoo
AK Amit Kumar
SB Shweta Balodi
AD Anupama Deora
SS Shikha Saxena
RG Ravi Kumar Gandham
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Ensembl is a comprehensive database addressing the challenges of decoding a eukaryotic genome from the set of functional elements it represents in providing access to the vast sea of data [22]. Ensemble BioMart is a hub for data retrieval across the taxonomic space. We extracted 5 kb upstream of 109 and 180 genes involved in immune processes in sheep and goats, respectively from Ensemble BioMart. The sequences containing a string of undefined bases (N′s) due to partially complete contigs were eliminated for further analysis using a customized perl script.

Copyright and License information:  ©2016 The Authors
This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

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