Curation of metabolic tasks

AR Anne Richelle
BK Benjamin P. Kellman
AW Alexander T. Wenzel
AC Austin W.T. Chiang
TR Tyler Reagan
JG Jahir M. Gutierrez
CJ Chintan Joshi
SL Shangzhong Li
JL Joanne K. Liu
HM Helen Masson
JL Jooyong Lee
ZL Zerong Li
LH Laurent Heirendt
CT Christophe Trefois
EJ Edwin F. Juarez
TB Tyler Bath
DB David Borland
JM Jill P. Mesirov
KR Kimberly Robasky
NL Nathan E. Lewis
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The curation was done by first taking the union of previously published lists of metabolic tasks (Blais et al., 2017; Thiele et al., 2013). We removed duplicated tasks and lumped tasks that rely on the description of similar metabolic functions. Each remaining task without strong biological evidence was removed. We also created 9 new tasks that were essential for the acquisition of already described metabolic functions (i.e., intermediate biosynthetic steps for the acquisition of other tasks). Doing so, we obtained a collection of 195 tasks associated with 7 systems (energy, nucleotide, carbohydrates, amino acid, lipid, vitamin & cofactor and glycan metabolism). For each task, we provided its original source (Recon and/or iHsa) and comments on the biological evidence of this metabolic function (Table S1).

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