The cycle threshold (Ct) values of the RT-PCR assays were calculated from the background corrected amplification curves using the Roto-Gene Q Software [V2.3.5] (Qiagen, Hilden, Germany) or the LightCycler 96 Software [V.1.1.0.1320] (Roche, Basel, Switzerland). Amplification curves from the RT-LAMP were analysed using an identical procedure. As LAMP is an isothermal amplification technique, the reaction time when the fluorescence signal exceeds the threshold is referred to as threshold time (Tt) value.
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