m6A quantification using ELISA and dot blot

VM Vera Miranda-Gonçalves
JL João Lobo
CG Catarina Guimarães-Teixeira
DB Daniela Barros-Silva
RG Rita Guimarães
MC Mariana Cantante
IB Isaac Braga
JM Joaquina Maurício
CO Christoph Oing
FH Friedemann Honecker
DN Daniel Nettersheim
LL Leendert H. J. Looijenga
RH Rui Henrique
CJ Carmen Jerónimo
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The m6A RNA methylation quantification kit (ab185912; Abcam, Cambridge, United Kingdom) was used to measure the m6A content of total RNA, following the manufacturer’s instructions. Positive and negative controls provided with the kit were used to compute m6A levels, according to the manufacturer’s instructions. This assessment was complemented by m6A dot blot assay. Briefly, 2000 ng of RNA were denatured at 95 °C for 3 min and then pipetted into nitrocellulose membranes. Membranes were dryed for 30 min at 37 °C following UV light exposure (125mJoules/cm2) for allowing crosslink between RNA and the membrane. Then, membranes were washed in TBS-0.1% Tween, blocked in 5% dry milk and incubated with primary antibody for m6A (Abcam, 1:1000) at 4 °C, overnight. After that, membranes were incubated with anti-rabbit secondary horseradish peroxidase conjugated antibody (1:5000, Cell Signaling Technology) for 1 h at room temperature and the signal was detected by chemiluminescence. Methylene blue staining solution (0.02% methylene blue in 0.3 M sodium acetate, pH 5.5) was used as loading control.

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