CD spectra of 150 µM peptides were measured at room temperature in 10 mM phosphate-buffered saline (PBS) (mimicking an aqueous environment), 50% TFE (mimicking the hydrophobic environment of the microbial membrane), and 30 mM SDS micelles (negatively charged prokaryotic membrane comparable environment) on a J-820 spectropolarimeter (Jasco; Tokyo, Japan), with a quartz cuvette with a 1.0-mm path length. The spectra were recorded from 195-250 nm at a scanning speed of 10 nm/min, and an average of 3 scans was collected for each peptide. The acquired CD spectra were then converted to the mean residue ellipticity with the following formula:
where θM is the mean residue ellipticity [(deg·cm2)/dmol], θobs is the observed ellipticity corrected for the buffer at a given wavelength [md, eg], c is the peptide concentration [mM], l is the path length [mm], and n is the number of amino acids.
Do you have any questions about this protocol?
Post your question to gather feedback from the community. We will also invite the authors of this article to respond.
Tips for asking effective questions
+ Description
Write a detailed description. Include all information that will help others answer your question including experimental processes, conditions, and relevant images.