Gene co-expression network analyses

KA Kimberly A. Aldinger
ZT Zach Thomson
IP Ian G. Phelps
PH Parthiv Haldipur
MD Mei Deng
AT Andrew E. Timms
MH Matthew Hirano
GS Gabriel Santpere
CR Charles Roco
AR Alexander B. Rosenberg
BL Belen Lorente-Galdos
FG Forrest O. Gulden
DO Diana O’Day
LO Lynne M. Overman
SL Steven N. Lisgo
PA Paula Alexandre
NS Nenad Sestan
DD Dan Doherty
WD William B. Dobyns
GS Georg Seelig
IG Ian A. Glass
KM Kathleen J. Millen
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Weighted gene co-expression network analysis (WGCNA) was performed using the R package.19 Summarized gene counts were converted to RPKM using RNA-SeQC56 v1.1.8. Log2-transformed RPKM values were used for this analysis as described previously.15

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