siRNA transfection and rescue experiments

MV Mireia Perez Verdaguer
TZ Tian Zhang
JP Joao A. Paulo
SG Steven Gygi
SW Simon C. Watkins
HS Hiroaki Sakurai
AS Alexander Sorkin
request Request a Protocol
ask Ask a question
Favorite

siRNAs (individual, ON-TARGET plus or siGENOME grade) were purchased from Dharmacon as follows: μ2: 5′-AAG​UGG​AUG​CCU​UUC​GGG​UCA-3′ (Huang et al., 2004); σ2 targeting 3′UTR: 5′-CCG​UGU​GUG​UCC​CGA​GUA​A-3′ (J-011833-09-0005); CHC: D-004001-02 (Huang et al., 2004); Grb2: 5′-CAU​GUU​UCC​CCG​CAA​UUA​UUU​UU-3′ (Jiang et al., 2003); Cbl-b: 5′-GGA​CAG​ACG​AAA​UCU​CAC​AUU-3′ (Huang et al., 2006); and c-Cbl: 5′-CCU​CUC​UUC​CAA​GCA​CUG​AUU-3′ (Huang et al., 2006).

The specificity of siRNAs (except of siRNA to σ2) was validated previously (Huang et al., 2004; Jiang et al., 2003). HeLa/FAP-EGFR cells were reverse-transfected in 6-well dishes with 50 nM siRNA (final concentration) and 3.5 µl DharmaFECT-1 in 1 ml of complete media without antibiotics. 2 d later, cells were split and plated on 96-well plates, coverslips, and other dishes (for Western blot analysis). The next day, the cells were starved overnight and used for experiments on day 4 after siRNA transfection. In AP2σ-GFP rescue experiments, cells were replated into 12-well dishes 36 h after siRNA transfection and transfected with DNA plasmids 12 h after plating. The next day, the cells were split again and plated onto 96-well plates or coverslips, serum-starved overnight, and used for experiments on day 5 after siRNA transfection. PAE cells were transfected with 50 nM μ2 siRNA 24 h after plating. 2 d later, the cells were replated and 8 h later were again siRNA-transfected. 2 d later, the cells were replated and used for experiments 24 h later.

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

post Post a Question
0 Q&A