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Identification of Members of the SlCCX Family in Tomato

JL Jiao Li
YZ Yaran Zhao
CC Chenliang Chang
XL Xin Liu
JJ Jing Jiang
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To identify tomato SlCCXs, Arabidopsis CCX protein sequences were used as queries. A BLASTP search was performed to identify members of the SlCCXs in tomato against the Solanaceae Genomics Network database1. These genes were termed Solanum lycopersicum CCXs (SlCCXs which contain SlCCX1; SlCCX1-LIKE; SlCCX4; SlCCX4-LIKE; SlCCX5), and the sequences were further used as queries for the BLASTN searches, against SGN tomato whole genome scaffolds data (2.10) (International Tomato Genome Sequencing Consortium)2. The SlCCXs were further used as query sequences to search for CCXs of the other Solanaceae members (Supplementary Table 1), using the NCBI3 and SGN4.

Copyright and License information:  ©2021 Li, Zhao, Chang, Liu and Jiang.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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