3.2.2. Modification of the Peptides with Linker Structures to Obtain 10–21

XC Xia Cheng
RH Ralph Hübner
VK Valeska von Kiedrowski
GF Gert Fricker
RS Ralf Schirrmacher
CW Carmen Wängler
BW Björn Wängler
request Request a Protocol
ask Ask a question
Favorite

General procedure for the synthesis of NHS-PEGn peptides (GP2): All steps were carried out under an N2 atmosphere. A total of 1.0 equiv. of the respective peptide was added to a solution of 1.0 equiv. bis-NHS-ester and 0.5–1.0 equiv. DIPEA in dry DMF. Subsequently, the reaction mixture was stirred for 5–40 min at room temperature, while reaction control was performed by HPLC (analytical, 0–50% MeCN + 0.1% TFA in 5 min). After the removal of the solvent under reduced pressure, the corresponding NHS-PEGn-peptide was obtained after purification via semipreparative HPLC. In addition to the respective target product, small amounts of the hydrolyzed compound HO-PEGn-peptide and the dimer peptide-PEGn-peptide were isolated (for analytical data, see Supplementary Materials Figures S65–S80).

NHS-PEG1-c(RGDfK) (10): According to GP2, NHS-PEG1-NHS (3.3 mg, 8.3 μmol, 1.0 equiv.), DIPEA (1.4 μL, 1.1 mg, 8.3 μmol, 1.0 equiv.) and c(RGDfK) (5.0 mg, 8.3 μmol, 1.0 equiv.) were reacted in 5 mL dry DMF for 20 min. After purification by HPLC (semipreparative, 0–30% MeCN + 0.1% TFA in 10 min, tR = 7.01 min), 10 was isolated as a colorless solid (3.0 mg, 3.4 μmol, yield: 41%, purity: >93%). MS (MALDI) m/z calculated for C39H56N10O14 [M]+: 888.40, found: 888.26; HR-ESI-MS m/z calculated for C39H57N10O14 [M + H]+: 889.4050, found: 889.4038.

NHS-PEG3-c(RGDfK) (11): According to GP2, NHS-PEG3-NHS (12.1 mg, 24.8 μmol, 1.0 equiv.), DIPEA (4.2 μL, 3.2 mg, 24.8 μmol, 1.0 equiv.) and c(RGDfK) (15.0 mg, 24.8 μmol, 1.0 equiv.) were reacted in 8 mL dry DMF for 15 min. After purification by HPLC (semipreparative, 0–30% MeCN + 0.1% TFA in 10 min, tR = 4.84 min), 11 was isolated as a colorless solid (7.0 mg, 7.2 μmol, yield: 29%, purity: >89%). MS (MALDI) m/z calculated for C43H64N10O16 [M]+: 976.45, found: 976.68; HR-ESI-MS m/z calculated for C43H65N10O16 [M + H]+: 977.4575, found: 977.4567.

NHS-PEG5-c(RGDfK) (12): According to GP2, NHS-PEG5-NHS (9.6 mg, 16.6 μmol, 1.0 equiv.), DIPEA (2.8 μL, 2.2 mg, 16.6 μmol, 1.0 equiv.) and c(RGDfK) (10.0 mg, 16.6 μmol, 1.0 equiv.) were reacted in 6 mL dry DMF for 30 min. After purification by HPLC (semipreparative, 15–30% MeCN + 0.1% TFA in 10 min, tR = 4.44 min), 12 was isolated as a colorless solid (6.1 mg, 5.7 μmol, yield: 35%, purity: >91%). MS (MALDI) m/z calculated for C47H73N10O18 [M + H]+: 1065.51, found: 1065.22; HR-ESI-MS m/z calculated for C47H73N10O8 [M + H]+: 1065.5099, found: 1065.5099.

NHS-PEG8-c(RGDfK) (13): According to GP2, NHS-PEG8-NHS (13.5 mg, 19.1 μmol, 1.0 equiv.), DIPEA (3.3 μL, 2.5 mg, 19.1 μmol, 1.0 equiv.) and c(RGDfK) (11.5 mg, 19.1 μmol, 1.0 equiv.) were reacted in 6 mL dry DMF for 40 min. After purification by HPLC (semipreparative, 0–30% MeCN + 0.1% TFA in 10 min, tR = 7.01 min), 13 was isolated as a colorless solid (7.3 mg, 6.1 μmol, yield: 32%, purity: >82%). MS (MALDI) m/z calculated for C53H85N10O21 [M + H]+: 1197.59, found: 1197.34; HR-ESI-MS m/z calculated for C53H84N10O21 [M + H]+: 1197.5885, found: 1197.5892.

NHS-PEG1-GG-Nle-c(DHfRWK) (16): According to GP2, NHS-PEG1-NHS (5.4 mg, 6.1 μmol, 1.0 equiv.), DIPEA (0.5 μL, 0.4 mg, 3.1 μmol, 0.5 equiv.) and 7 (6.7 mg, 6.1 μmol, 1.0 equiv.) were reacted in 5 mL dry DMF for 5 min. After purification by HPLC (semipreparative, 15–50% MeCN + 0.1% TFA in 10 min, tR = 4.80 min), 16 was isolated as a colorless solid (3.6 mg, 2.6 μmol, yield: 43%, purity: >93%). MS (MALDI) m/z calculated for C64H89N18O17 [M + H]+: 1381.66, found: 1381.34; HR-ESI-MS m/z calculated for C64H89N18O17 [M + H]+: 1381.6648, found: 1381.6643.

NHS-PEG3-GG-Nle-c(DHfRWK) (17): According to GP2, NHS-PEG3-NHS (4.7 mg, 9.6 μmol, 1.0 equiv.), DIPEA (1.6 μL, 1.2 mg, 9.6 μmol, 1.0 equiv.) and 7 (10.5 mg, 9.6 μmol, 1.0 equiv.) were reacted in 6 mL dry DMF for 40 min. After purification by HPLC (semipreparative, 10–30% MeCN + 0.1% TFA in 10 min, tR = 8.51 min), 17 was isolated as a colorless solid (6.9 mg, 4.7 μmol, yield: 49%, purity: >91%). MS (MALDI) m/z calculated for C68H97N18O19 [M + H]+: 1469.72, found: 1469.47; HR-ESI-MS m/z calculated for C68H98N18O19 [M + 2H]2+: 735.3622, found: 735.3619; HR-ESI-MS m/z calculated for C68H97N18O19 [M + H]+: 1469.7172, found: 1469.7154.

NHS-PEG5-GG-Nle-c(DHfRWK) (18): According to GP2, NHS-PEG5-NHS (5.3 mg, 9.1 μmol, 1.0 equiv.), DIPEA (1.6 μL, 1.2 mg, 9.1 μmol, 1.0 equiv.) and 7 (10.0 mg, 9.1 μmol, 1.0 equiv.) were reacted in 5 mL dry DMF for 30 min. After purification by HPLC (semipreparative, 10–50% MeCN + 0.1% TFA in 8 min, tR = 5.86 min), 18 was isolated as a colorless solid (5.9 mg, 3.8 μmol, yield: 42%, purity: >90%). MS (MALDI) m/z calculated for C72H104N18O21 [M]+: 1556.73, found: 1556.24; HR-ESI-MS m/z calculated for C72H106N18O21 [M + 2H]2+: 779.3884, found: 779.3884.

NHS-PEG8-GG-Nle-c(DHfRWK) (19): According to GP2, NHS-PEG8-NHS (3.3 mg, 4.7 μmol, 1.0 equiv.), DIPEA (0.8 μL, 0.6 mg, 4.7 μmol, 1.0 equiv.) and 7 (5.1 mg, 4.7 μmol, 1.0 equiv.) were reacted in 3 mL dry DMF for 40 min. After purification by HPLC (semipreparative, 0–50% MeCN + 0.1% TFA in 8 min, tR = 6.09 min), 19 was isolated as a colorless solid (3.3 mg, 2.0 μmol, yield: 42%, purity: >90%). MS (MALDI) m/z calculated for C78H117N18O24 [M + H]+: 1689.85, found: 1689.09; HR-ESI-MS m/z calculated for C78H118N18O24 [M + 2H]2+: 845.4278, found: 845.4275.

General procedure for the synthesis of HO-DIG- and HO-Ox-EGEGE peptides (GP3): All steps were carried out under an N2 atmosphere. In total, 1.0–10.0 equiv. of the respective peptide was added to a solution of 1.0–10.0 equiv. bis-NHS-ester and 1.0 equiv. DIPEA in dry DMF. Subsequently, the reaction mixture was stirred for 5–50 min at room temperature, while the reaction control was performed by HPLC (analytical, 0–50% MeCN + 0.1% TFA in 5 min). After the removal of the solvent under reduced pressure, the corresponding HO-DIG- or HO-Ox-EGEGE peptides were obtained after semipreparative HPLC purification. In addition to the target products, small amounts of the dimers peptide-DIG/Ox-EGEGE-peptide were isolated (for analytical data, see Supplementary Materials Figures S81–S84).

HO-DIG-c(RGDfK) (14): According to GP3, NHS-DIG-NHS (8.2 mg, 24.9 μmol, 1.5 equiv.), c(RGDfK) (10.0 mg, 16.6 μmol, 1.0 equiv.) and DIPEA (2.8 μL, 2.1 mg, 16.6 μmol, 1.0 equiv.) were reacted in 11 mL dry DMF for 50 min. After purification by HPLC (semipreparative, 5–40% MeCN + 0.1% TFA in 10 min, tR = 3.80 min), 14 was isolated as a colorless solid (4.4 mg, 6.1 μmol, yield: 37%, purity: >99%). MS (MALDI) m/z calculated for C31H45N9O11 [M]+: 719.32, found: 719.59; HR-ESI-MS m/z calculated for C31H46N9O11 [M + H]+: 720.3311, found: 720.3309.

HO-Ox-EGEGE-c(RGDfK) (15): According to GP3, NHS-Ox-NHS (17.9 mg, 63 μmol, 5.0 equiv.), 8 (13.9 mg, 12.6 μmol, 1.0 equiv.) and DIPEA (10.7 μL, 8.1 mg, 63 μmol, 5.0 equiv.) were reacted in 8 mL dry DMF for 5 min. After purification by HPLC (semipreparative, 5–20% MeCN + 0.1% TFA in 8 min, tR = 4.29 min), 15 was isolated as a colorless solid (5.9 mg, 5.0 μmol, yield: 40%, purity: >99%). MS (MALDI) m/z calculated for C48H69N14O21 [M + H]+: 1177.48, found: 1177.02; HR-ESI-MS m/z calculated for C48H68N14O21 [M]+: 1176.4683, found: 1176.4913.

HO-DIG-GG-Nle-c(DHfRWK) (20): According to GP3, NHS-DIG-NHS (1.5 mg, 3.6 μmol, 1.0 equiv.), 7 (5.0 mg, 3.6 μmol, 1.0 equiv.) and DIPEA (0.6 μL, 0.5 mg, 3.6 μmol, 1.0 equiv.) were reacted in 2 mL dry DMF for 25 min. After purification by HPLC (semipreparative, 10–40% MeCN + 0.1% TFA in 10 min, tR = 5.36 min), 20 was isolated as a colorless solid (2.7 mg, 2.2 μmol, yield: 61%, purity: >99%). MS (MALDI) m/z calculated for C56H78N17O14 [M + H]+: 1212.59, found: 1212.16; HR-ESI-MS m/z calculated for C56H79N17O14 [M + 2H]2+: 606.7991, found: 606.7991.

HO-Ox-EGEGE-GG-Nle-c(DHfRWK) (21): According to GP3, NHS-Ox-NHS (17.8 mg, 62.6 μmol, 10.0 equiv.), 9 (10.0 mg, 6.3 μmol, 1.0 equiv.) and DIPEA (10.7 μL, 8.1 mg, 62.6 μmol, 10.0 equiv.) were reacted in 5 mL dry DMF for 10 min. After purification by HPLC (semipreparative, 0–40% MeCN + 0.1% TFA in 8 min, tR = 6.41 min), 21 was isolated as a colorless solid (4.5 mg, 2.7 μmol, yield: 44%, purity: >99%). MS (MALDI) m/z calculated for C73H100N22O24 [M]+: 1668.73, found: 1668.90; HR-ESI-MS m/z calculated for C73H102N22O24 [M + 2H]2+: 835.3713, found: 835.3716.

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

0/150

tip Tips for asking effective questions

+ Description

Write a detailed description. Include all information that will help others answer your question including experimental processes, conditions, and relevant images.

post Post a Question
0 Q&A