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4.4. Cancer Cell Line Encyclopedia (CCLE)

QY Qing Ye
JP Joseph Putila
RR Rebecca Raese
CD Chunlin Dong
YQ Yong Qian
AD Afshin Dowlati
NG Nancy Lan Guo
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MiRNA and mRNA expression data for CCLE were downloaded from DepMap 20Q2 (https://figshare.com/articles/dataset/DepMap_20Q2_Public/12280541, accessed on 1 April 2021) [84]. Gene expression data were obtained from the CCLE data portal (https://data.broadinstitute.org/ccle/CCLE_RNAseq_081117.rpkm.gct, accessed on 1 April 2021). RNA-seq data were quantified using the GTEx pipelines [85]. A total of 117 NSCLC cell lines were included in this analysis.

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Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).

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