莱茵衣藻自溶素的生产

Justin  Findinier

doi:10.21769/BioProtoc.4705

Improve Research Reproducibility A Bio-protocol resource

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Peer-reviewed

Autolysin Production from Chlamydomonas reinhardtii

莱茵衣藻自溶素的生产

JF Justin Findinier email

发布: 2023年07月05日第13卷第13期 DOI: 10.21769/BioProtoc.4705 浏览次数: 1921

评审: Ansul LokdarshiSamed DelicNoelia Foresi

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The authors used this protocol in:

Cover of The Plant Cell, featuring study using the protocol.

Mar 2023

Special Issue on Protocols for Organoid Research

实验方案合集

Cell Imaging - A Special Collection for Cell Bio 2023

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Abstract

Chlamydomonas reinhardtii is a model organism for various processes, from photosynthesis to cilia biogenesis, and a great chassis to learn more about biofuel production. This is due to the width of molecular tools available, which have recently expanded with the development of a modular cloning system but, most importantly, with CRISPR/Cas9 editing now being possible. This technique has proven to be more efficient in the absence of a cell wall by using specific mutants or by digesting Chlamydomonas cell wall using the mating-specific metalloprotease autolysin (also called gametolysin). Multiple protocols have been used and shared for autolysin production from Chlamydomonas cells; however, they provide very inconsistent results, which hinders the capacity to routinely perform CRISPR mutagenesis. Here, we propose a simple protocol for autolysin production requiring transfer of cells from plates into a dense liquid suspension, gametogenesis by overnight incubation before mixing of gametes, and enzyme harvesting after 2 h. This protocol has shown to be highly efficient for autolysin production regardless of precise control over cell density at any step. Requiring a minimal amount of labor, it will provide a simple, ready-to-go approach to produce an enzyme critical for the generation of targeted mutants.

Graphical overview

Workflow for autolysin production from Chlamydomonas reinhardtii

Background

Chlamydomonas’ genetic transformation has been possible for random insertional mutagenesis for over three decades (Kindle, 1990). In the last six years, methods have been developed for the precise editing of Chlamydomonas genome using the CRISPR technology by transfection of the ribonucleoprotein complex (RNP) directly through electroporation (Shin et al., 2016). Results have made clear that the cell wall is a strong barrier to entry of the RNP, as editing efficiency is usually much higher in cell wall–less strains or after digestion of the cell wall. Cell wall degradation can be performed using a commercially available enzyme called subtilisin/alcalase, but it has been shown to be only half as efficient as autolysin (Hwang et al., 2018), an enzyme produced by Chlamydomonas during mating in order to digest the cell wall and allow cell fusion of the two partners (Matsuda and Kubo, 2004). Autolysin can be extracted from a mixture of mating cells by centrifugation, preserved by freezing at -80 °C, and used later on any given walled strain to prepare for transformation. Several protocols are available in the literature as well as on the Chlamydomonas Resource Center website, but their efficiency has proven inconsistent in our hands. Here, we present a very simple protocol that requires minimal monitoring of cell growth and density, with overall > 70% efficiency. This will allow researchers interested in using the CRISPR technology to produce good quality autolysin and obtain mutated strains in their gene of interest, regardless of their favorite wildtype strain.

Materials and reagents

90 mm Petri dishes
Inoculating loop
Sterile 50 mL centrifuge tubes
Cell scraper
Pipette tips
1.7 mL microcentrifuge tubes
50 mL conical tubes
50 mL Luer-lock syringe
0.45 μm PES filter (VWR, catalog number: 76479-020)
Permanent marker pen
Microscope slides with eight wells (75 mm × 25 mm) (MP Biomedicals, catalog number: 096040805)
Plastic spectrophotometer cuvette (VWR, catalog number: 97000-586)
1 L filtration unit (VWR, catalog number: 10040-440)
Mating type (MT)+ wildtype strain CC-125 (available from the Chlamydomonas Resource Center, www.chlamy.org)
MT- wildtype strain CC-124 (available from the Chlamydomonas Resource Center, www.chlamy.org)
Note: Other pairs of MT+/MT- strains can be used; CC-620/621 are usually recommended due to their high mating efficiency.
Cell wall–less wildtype strain CC-503 (cw92, available from the Chlamydomonas Resource Center, www.chlamy.org)
Ammonium chloride (NH₄Cl) (Sigma, catalog number: A9434)
Sodium chloride (NaCl) (Sigma, catalog number: 746398)
Calcium chloride dihydrate (CaCl₂·2H₂O) (Sigma, catalog number: C3881)
Magnesium sulfate heptahydrate (MgSO₄·7H₂O) (Sigma, catalog number: 63140)
Tris base (J.T. Baker, catalog number: 4099-07)
Potassium phosphate monobasic (KH₂PO₄) (J.T. Baker, catalog number: 3246-07)
Potassium phosphate dibasic (K₂HPO₄) (J.T. Baker, catalog number: 3252-07)
Ethylenediaminetetraacetic acid disodium salt dihydrate (Na₂EDTA·2H₂O) (Sigma, catalog number: E5134)
Iron (II) sulfate heptahydrate (FeSO₄·7H₂O) (Sigma, catalog number: F-8048)
Zinc sulfate heptahydrate (ZnSO₄·7H₂O) (Sigma, catalog number: Z0251)
Boric acid (H₃BO₃) (Sigma, catalog number: B6768)
Manganese (II) chloride tetrahydrate (MnCl₂·4H₂O) (Sigma, catalog number: 221279)
Copper (II) chloride dihydrate (CuCl₂·2H₂O) (Sigma, catalog number: 467847)
Sodium molybdate dihydrate (Na₂MoO₄·2H₂O) (J.T. Baker, catalog number: 3764)
Cobalt (II) chloride hexahydrate (CoCl₂·6H₂O) (Sigma, catalog number: C2644)
Glacial acetic acid (Sigma, catalog number: 320099)
Triton X-100 (Sigma, catalog number: T-9284)
Granulated agar (Fisher Scientific, catalog number: BP9744-5)
0.1% Triton X-100 (see Recipes)
Sucrose (Sigma, catalog number: S0389)
Stock solutions
1. Salts +N solution (20×) (see Recipes)
2. Salts -N solution (20×) (see Recipes)
3. 2 M Tris Base (100×)
4. Phosphate buffer (200×) (see Recipes)
5. Hutner’s trace elements (200×) (see Recipes, also available from the Chlamydomonas Resource Center, www.chlamy.org)
TAP (Tris-Acetate-Phosphate) liquid medium (see Recipes)
TAP 1.5% agar medium (see Recipes)
TAP -N liquid medium (see Recipes)
TAP sucrose 40 mM (see Recipes)