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Suite2p is a software package for the analysis of calcium imaging data [17]. We tested Suite2P on simulated datasets using the software available on github https://github.com/MouseLand/suite2p. To obtain good spatial footprints, we set the overlapping parameter to be True across simulations. When the spike amplitude was lower or equal to 0.01, we turned off the sparse_mode and when the spike amplitude was 0.005, we turned off the connected parameter. We flipped and high-passed the signals with a 15Hz filter and applied a manual threshold to extract spikes.
Copyright and License information: ©2021 Cai et al ©2021 Blackwell, AckerThis is an open access article distributed under the terms of the , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ©2021 Blackwell, AckerThis is an open access article distributed under the terms of the , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ©2021 Blackwell, AckerThis is an open access article distributed under the terms of the , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ©2021 Blackwell, AckerThis is an open access article distributed under the terms of the , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
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