For recordings in the medulla and AOTU, we included only the set of polarization-selective pixels, as described for the tuning maps (see Polarization tuning map). For recordings in the bulb and protocerebral bridge, we used ROIs drawn manually on individual glomeruli. We projected pixel or ROI positions (x,y) onto a single horizontal axis (anterior-posterior in the medulla, medial-lateral in the central brain) or vertical axis (ventral-dorsal throughout) and then normalized to give a linear position ranging from 0 to 1. The majority of recordings were performed in the right brain hemisphere; where left hemisphere recordings were included, we inverted their positions along both axes (i.e. in the medulla, anterior positions on the left were pooled with posterior positions on the right), since we expected the mirror-symmetric polarotopy found in the dorsal rim (Figure 1—figure supplement 1G,H) to be preserved downstream. We then pooled the normalized positions and corresponding preferred AoP across all recordings and created a scatter plot with a random subset of 1000 data points, displaying either the corresponding PSI value or preferred AoP as the color of each point in the plot.

We quantified circular-linear associations between preferred angle (multiplied by two to correct for axial data) and normalized position by finding the slope and phase offset of a regression line, and then a correlation coefficient, according to Kempter et al., 2012. We found the correlation coefficient for the population by pooling all data points, then performed a permutation test on the pooled dataset with shuffled combinations of position and preferred AoP and recalculated the correlation coefficient 10,000 times. We report an upper-bound on the p-value as the proportion of shuffled datasets with a correlation coefficient exceeding that found for the experimental dataset plus one (Phipson and Smyth, 2010). We also found the correlation coefficients for individual recordings and an associated p-value (Kempter et al., 2012). Where indicated, the regression lines for the pooled dataset and for individual recordings with a sufficient number of pixels to give a meaningful correlation (p < 0.05) are shown on scatter plots.

We applied the Fisher z-transformation to correlation coefficients to find a mean correlation coefficient across flies. We used a hierarchical bootstrap method (Saravanan et al., 2020) to find 95% confidence intervals for the mean correlation coefficient found. We resampled with replacement from the population of flies, then resampled with replacement from all recordings made from those flies and recalculated the mean correlation coefficient after applying the Fisher z-transformation, repeated 10,000 times. From the bootstrapped population of mean correlation coefficients we found confidence intervals using the bias-corrected and accelerated method (Efron, 1987). In all cases, the correlation coefficient for the pooled dataset from all recordings was found to be close to the mean coefficient for individual flies and within the confidence interval calculated. For recordings in the bulb and protocerebral bridge, we also calculated the circular-circular correlation coefficient (Berens, 2009; Zar, 1999).

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