Quantitative reverse transcription-polymerase chain reaction (qRT-PCR)

JF Jun Fang
WJ Wen Hao Ji
FW Fang Zheng Wang
TX Tie Ming Xie
LW Lei Wang
ZF Zhen Fu Fu
ZW Zhun Wang
FY Feng Qin Yan
QS Qi Liang Shen
ZY Zhi Min Ye
ask Ask a question
Favorite

Total RNA was extracted from KYSE-410, KYSE-150, ECA-109, TE-1, and HET-1A cells by using TRIzol Reagent (Invitrogen, CA, USA) according to the manufacturer's instructions. For circRNA analysis, cDNA was synthesized by using Prime ScriptTM RT Master Mix (Takara, Japan), and for miRNA analysis, RNA was reverse transcribed into cDNA using the Mir-X miRNA First-Strand Synthesis Kit (Takara, Japan). The nucleus and cytoplasm were separated with NE-PER Nuclear and Cytoplasmic Extraction Reagents (Thermo Fisher Scientific) following the manufacturer's instructions. qRT-PCR was conducted with SYBR® Premix Ex Taq™ (Takara) on a CFX96 Touch Deep Well detection system (Bio-Rad, USA) with the following primers: circ_0000700, 5'-CTGGCTGAACATATCCCTTGGC-3' (forward) and 5'-TCCAAGGGATATGTTCAGCCA-3' (reverse); U6, 5'-CTCGCTTCGGCAGCACA-3' (forward) and 5'-AACGCTTCACGAATTTGCGT-3' (reverse); and GAPDH, 5'-AGA AGGCTGGGGCTCATTTG-3' (forward) and 5'-AGGGGCCATCCACAGTCTTC-3' (reverse). The entire sequence of the mature miR-1229 miRNA sequence was used as the miRNA-specific 5' primer, and the 3' primer for qRT-PCR was the mRQ 3' primer supplied with the kit. GAPDH was used as the reference gene for circ_0000700, and U6 was selected as the internal reference for miR-1229. The relative expression of the aforementioned targets was assessed by the 2-ΔΔCt method.

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

post Post a Question
0 Q&A