Improve Research Reproducibility A Bio-protocol resource
- Home
- Protocols
-
Request a Protocol
Ask a
question
Favorite
Sequencing reads were trimmed using Trimmomatic v0.33 (Bolger et al., 2014) and aligned to mm10 assembly using bwa-mem v0.7.17 (Li, 2013). PCR duplicate sequencing reads were removed using MarkDuplicates from Picard toolkit (http://broadinstitute.github.io/picard/). Broad peak calling on the de-duplicated BAM files was performed using MACS v2.1.2 (Zhang et al., 2008).
Copyright and License information: ©2020 The Author(s)
This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
Do you have any questions about this protocol?
Post your question to gather feedback from the community. We will also invite the authors of this article to respond.
Post a Question0 Q&A
