Reverse transcriptase-polymerase chain reaction (RT-PCR)

JP Ji Won Park
SL Su Jin Lee
JK Ji Eun Kim
MK Mi Ju Kang
SB Su Ji Bae
YC Yun Ju Choi
JG Jeong Eun Gong
KK Kil Soo Kim
YJ Young-Suk Jung
JC Joon-Yong Cho
YC Yeon Shik Choi
DH Dae Youn Hwang
HS Hyun Keun Song
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The mRNA expressions of TNF-α, IL-6, COX-2 and iNOS were measured using RT-PCR. Total RNA was extracted from the spleen tissue of all experimental animals, with RNAzol CS104 (Tel-Test Inc., Friendswood, TX, USA). The isolated mRNA was reverse transcribed using M-MLV reverse transcriptase (Promega, Madison, WI, USA) at 42°C for 1 h, according to the manufacturer’s protocol, followed by addition of 10 pmol of the sense and antisense primers. The reaction mixture was then subjected to 28–32 cycles of amplification, conducted in a Perkin-Elmer Thermal Cycler using the following cycles: 30 s at 94°C, 30 s at 62°C, and 45 s at 72°C. The primer sequences used for target gene expression identification were as follows: TNF-α, sense primer: 5′- GGC CTC TCT ACC TTG TTG CC − 3′, anti-sense primer: 5′- CAG CCT GGT CAC CAA ATC AG -3′; IL-6, sense primer: 5′- TTG CCT TCT TGG GAC TGA TG − 3′, anti-sense primer: 5′- CCA CGA TTT CCC AGA GAA CA -3′; COX-2, sense primer: 5′-CAGGT CATTG GTGGA GAGGT GTATC-3′, anti-sense primer: 5′-CCAGG AGGAT GGAGT TGTTG TAGAG-3′; iNOS, sense primer: 5′- CGA AAC GCT TCA CTT CCA A − 3′, anti-sense primer: 5′- TGA GCC TAT ATT GCT GTG GCT − 3′; β-actin, sense primer: 5′- CAG GTC ATT GGT GGA GAG GTG TAT C − 3′, anti-sense primer: 5′- CCA GGA GGA TGG AGT TAT TAT AGA G − 3′. The experiment was repeated three times, and all samples were analyzed in triplicate. The final PCR products were separated on 1–2% agarose gel, followed by visualization after ethidium bromide staining. The density of a specific band was quantified using the Kodak Electrophoresis Documentation and Analysis System 120 (Eastman Kodak, Rochester, NY, USA).

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