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Synapse by synapse: High-speed cortical connectomics using optomapping

Speaker: Christina You Chien Chou Moderator: Jesper Sjöström and Shawniya Alageswaran

Online live: Jun 26, 2025 11:30 AM EST Views: 5521

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Abstract

Understanding how cortical circuits are wired is essential to decoding how the brain processes information. This webinar will introduce optomapping—a high-throughput, two-photon optogenetic method that accelerates microcircuit mapping nearly 100-fold compared to traditional patch-clamp techniques. This innovative approach has been used to map excitatory microcircuits in the visual cortex with single-cell spatial and millisecond temporal resolution. Using acute brain slices from mice, this work uncovered previously unknown patterns of excitatory inputs onto neocortical basket cells and Martinotti cells. The findings revealed that excitatory input strengths are log-normally distributed, not only onto excitatory neurons but also onto inhibitory ones, and that short-term synaptic dynamics depend on both the cell type and the presynaptic cortical layer, adding complexity to our understanding of circuit function.

This session will walk you through how optomapping works, what these findings tell us about the organizational principles of cortical microcircuits, and how this technique opens the door to exploring brain connectivity at unprecedented speed and resolution.


Highlights

- Introduction to optomapping. 

- Enhanced understanding of canonical circuits. 

- Revealing cell type–specific excitatory synaptic input patterns.

- Layer-specific synaptic dynamics.

- Overcoming limitations of traditional techniques with optomapping and its broader implications.

Speaker

Christina You Chien Chou

Christina You Chien Chou, Ph.D.

Medical Writer, LiV Medical Education Agency

Dr. Christina Chou completed her Ph.D. in Neuroscience in Dr. Jesper Sjöström’s lab at McGill University, Canada, in 2024. During her doctoral stud...

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Moderator

Jesper Sjöström

Jesper Sjöström, Ph.D.

Director, Centre for Research in Neuroscience, McGill University

Dr. Jesper Sjöström, is a professor in the Department of Neurology and Neurosurgery and the Department of Medicine at McGill University. He is Acti...

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Shawniya Alageswaran

Shawniya Alageswaran, M.Sc.

Ph.D. Student, McGill University

Shawniya Alageswaran is a Ph.D. Candidate in Neuroscience in Jesper Sjöström’s lab at McGill University, Canada. Before her time at McGill, Shawniy...

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Keywords

Connectivity, Short-term plasticity, Optogenetics, Microcircuit, Plasticitome, Two-photon mapping

References

1.

Chou CYC, Wong HHW, Guo C, Boukoulou KE, Huang C, Jannat J, Klimenko T, Li VY, Liang TA, Wu VC, Sjöström PJ. Principles of visual cortex excitatory microcircuit organization. Innovation (Camb). 2024 Dec 12;6(1):100735. doi: 10.1016/j.xinn.2024.100735. PMID: 39872485; PMCID: PMC11763898.

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7 Q&A

high-resolution high-speed & bioinformatics integration

How does Synapse's optomapping technology achieve high-resolution, high-speed cortical connectomics, and what are its current limitations in mapping synaptic-scale connectivity across whole-brain networks? How is Synapse’s high-speed optomapping technology integrated with bioinformatics pipelines to process, analyze, and visualize large-scale cortical connectomics data, and what computational frameworks support its scalability and synaptic-resolution accuracy?

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edit 0 Answer 11 Views Jun 12, 2025

Generality about this techniques

i want a general introduction for this technology.


edit 0 Answer 5 Views Jun 11, 2025