RNA isolation and PCR-based expression analysis

CP Christian Perez-Shibayama
UI Ulrika Islander
ML Mechthild Lütge
HC Hung-Wei Cheng
LO Lucas Onder
SR Sandra S. Ring
AM Angelina De Martin
MN Mario Novkovic
JC Julia Colston
CG Cristina Gil-Cruz
BL Burkhard Ludewig
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RNA was isolated from sorted cells using the RNeasy Mini Kit (Qiagen). Contaminating DNA was eliminated through on-column DNase digestion (Zymo Research). To generate complementary DNA (cDNA) for RT-PCR analysis, we used the High-Capacity cDNA Reverse Transcription Kit (Applied Biosystems). RT-PCR amplification and quantification were performed using a real-time PCR machine (QuantStudio 5, Thermo Fisher). Amplification was done using the LightCycler FastStart DNA Master SYBR Green I Kit (Roche), and Hprt was used as housekeeping gene. Reactions were performed in duplicate, and relative gene expression was calculated using the ΔΔCt method.

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