Hierarchical and K-means clustering of SP21 and CX229 expression

SJ Sonali Jindal
NP Nathan D. Pennock
AK Alex Klug
JN Jayasri Narasimhan
AC Andrea Calhoun
MR Michelle R. Roberts
RT Rulla M. Tamimi
AE A. Heather Eliassen
SW Sheila Weinmann
VB Virginia F. Borges
PS Pepper Schedin
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Percent area stained for SP21 and CX229 dual-stained FFPE tissue from the NHS1 and YWBCTP cohorts were separately subjected to hierarchical and K-means clustering, and optimal cluster numbers were obtained. Hierarchical clustering was performed using R studio software. For K-means clustering, the lowest expression group was identified as the distribution containing the negative stained group above which all values would be considered positive65,66.

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