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2.11. Construction of Phylogenetic Tree

ZW Zengmeng Wang
JZ Jiulong Zhao
CL Chengcheng Li
YZ Yongyu Zhang
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The amino acid sequences of DNA polymerase subunit B of phage S0112 was aligned with those of the closely related bacteriophages, deposited in the NCBI database, using MUSCLE implanted in the MEGA 7.0 [36]. The maximum likelihood phylogenetic tree with 1000 bootstrap replications for DNA polymerase subunit B amino acid sequences was constructed by the model of Poisson. To find the closest relatives of phage S0112, the ViPTree was used to construct the viral proteomic tree [37].

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Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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